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Cyberinfrastructure Engineer

University of Chicago

Chicago, ILOnsitePosted 24 days ago$80,000.00 - $90,000.00
Full TimeMid LevelTech & Data (Health IT)Academic
Original posting ↗

Summary

As the Cyberinfrastructure Engineer at the MANIAC Lab within the Enrico Fermi Institute, you will report directly to Research Assistant Professor Giordon Stark. You will help build and operate advanced cyberinfrastructure for science collaborations such as the ATLAS experiment at the CERN LHC. These collaborations rely on data-intensive, distributed computing technologies such as HTCondor, Kubernetes, and Ceph. You will help operate the storage, compute, and GPU infrastructure in the University's campus data centers. This infrastructure connects researchers to the national-scale OSG fabric and to emerging AI/ML service platforms. The work combines hands-on Linux systems administration and on-site hardware support with cloud-native operations using Kubernetes, Helm, containers, and GitOps tooling. It also involves distributed storage (Ceph via Rook, ZFS), configuration management (Puppet), and monitoring and alerting (Prometheus, Grafana). The team is collaborative and partly distributed. We meet weekly over Zoom and coordinate daily in Slack. Team members are expected to take ownership of their work and function independently. The position is jointly supported by the ATLAS Midwest Tier 2 Center (MWT2), focused on production operations, and by IRIS-HEP, focused on building the infrastructure that enables AI agents to drive physics analysis and facility operations for the HL-LHC era.

Job description

Responsibilities

Facility operations (MWT2 and the UChicago Analysis Facility, approximately 50%)

  • Provides systems administrative services for Linux compute clusters (CPU and GPU), storage systems, and related support servers. These systems support ATLAS production and analysis at the Midwest Tier 2 Center and the Analysis Facility.
  • Operates, upgrades, and scales Ceph distributed storage (including Rook-managed Ceph on Kubernetes). The goal is to meet growing HL-LHC capacity and throughput requirements.
  • Performs on-site hardware work in campus data centers, including installing, retrofitting, and replacing servers, storage, and GPUs.
  • Manages vendor support cases and spare-parts inventory.
  • Maintains monitoring, dashboards, and alerting (e.g., Prometheus, Grafana) for storage, compute, network, and hardware health.
  • Applies operating system and service security patches and vulnerability mitigations in coordination with University security requirements.
  • Performs network diagnostics, throughput measurement, and analysis for both LAN and WAN.
  • Supports the facility's participation in WLCG Data Challenges and HL-LHC readiness scale tests.
  • Participates in the team's operations support rotation and maintains documentation and operational runbooks.

Agentic research infrastructure (IRIS-HEP, approximately 50%)

  • Deploys and operates the infrastructure for agent-driven physics analysis. This includes the Lab's MCP gateway, the MCP servers it brokers access to, and the credential services behind them. Together, these let researchers' AI assistants securely use facility resources such as HTCondor, Kubernetes, Rucio, and ServiceX.
  • Supports IRIS-HEP integration challenges and demonstrations of end-to-end agentic analysis workflows. The work spans dataset discovery, batch processing, analysis, and inference run through AI agents.
  • Operates GPU platforms for machine learning and AI workloads, including locally hosted large language models and sandboxed agent environments.
  • Helps develop and operate AI-assisted operations agents that monitor HTCondor, Kubernetes, Ceph, and related services. These agents propose corrective actions under human review.
  • Deploys and operates services using container-based approaches (Docker, Kubernetes, Helm) and GitOps workflows (e.g., Flux).
  • Contributes reusable deployment bundles to the SSL Deployment Factory so other facilities can adopt these services.
  • Learns new distributed computing, AI/ML, and infrastructure-as-a-service technologies.
  • Maintains complex system and network administration functions.
  • Works with moderate guidance to administer simple systems and assists in the administration of larger systems.
  • Installs, configures, and maintains operating system workstations and servers.
  • Performs software installations and upgrades to operating systems and layered software packages.
  • Monitors and tunes the system to achieve optimum performance levels, acquiring higher-level skills in the process.
  • Performs other related work as needed.

Minimum Qualifications

  • Education: Minimum requirements include a college or university degree in related field.
  • Work Experience: Minimum requirements include knowledge and skills developed through 2-5 years of work experience in a related job discipline.

Preferred Qualifications

  • Education: Bachelor’s degree in Computer Science, Computer Engineering, Physics or related field.
  • Experience: Strong experience managing Linux operating systems.
  • Configuration management and build systems for large numbers of computers using tools such as Puppet, Chef and Ansible.
  • Experience operating distributed storage at scale, particularly Ceph (including Rook on Kubernetes).
  • Hands-on data center hardware experience, including server diagnostics, component replacement, and working with vendor support (e.g., Dell iDRAC/warranty processes).
  • Experience with monitoring and alerting tools such as Nagios, Prometheus, Grafana, and Alertmanager.
  • Technical Knowledge or Skills: Unix/Linux operating systems administration tools and shell scripts.
  • Distributed storage systems such as Ceph; local file systems such as ZFS.
  • Git version control, scripting (Bash, Python) and automation.
  • Knowledge and expertise in technologies such as TCP/IP and related protocols; networked file systems, including NFS.
  • Knowledge or experience with batch scheduling systems such as Slurm or HTCondor.
  • Knowledge of container technologies such as Docker, Kubernetes, Helm, OpenShift/OKD, OpenStack.
  • Familiarity with identity and access management (e.g., Keycloak, OAuth/OIDC).
  • Preferred Competencies: Strong oral and written communication skills.
  • Initiative and capacity for teamwork and creativity.
  • Ability to effectively communicate and collaborate with team members, supervisors, and researchers.
  • Ability to manage complex technical details and switch between projects.
  • Ability to work independently with minimal supervision, take ownership of issues through resolution, and keep the team informed.
  • Comfortable collaborating in a distributed team through weekly Zoom meetings and daily Slack communication.
  • Knowledge or experience with Spark, Dask or Ray.
  • Knowledge of GitOps and cluster lifecycle tooling such as Flux, Argo CD, or Kubespray.
  • Experience with GPU servers, including NVIDIA drivers, CUDA, and GPU scheduling in Kubernetes or HTCondor.
  • Familiarity with AI/ML infrastructure, such as model serving, LLM-based tooling, or MCP, is a plus.

Working Conditions

Able to work on-site in University data centers on a regular basis to physically install, move, and replace hardware of up to 50lbs/person.

Requirements

  • College or university degree in related field
  • 2-5 years of work experience in a related job discipline
  • Strong experience managing Linux operating systems
  • Configuration management and build systems for large numbers of computers using tools such as Puppet, Chef and Ansible
  • Experience operating distributed storage at scale, particularly Ceph (including Rook on Kubernetes)
  • Hands-on data center hardware experience, including server diagnostics, component replacement, and working with vendor support
  • Experience with monitoring and alerting tools such as Nagios, Prometheus, Grafana, and Alertmanager
  • Unix/Linux operating systems administration tools and shell scripts
  • Distributed storage systems such as Ceph; local file systems such as ZFS
  • Git version control, scripting (Bash, Python) and automation
  • Knowledge and expertise in technologies such as TCP/IP and related protocols; networked file systems, including NFS
  • Knowledge or experience with batch scheduling systems such as Slurm or HTCondor
  • Knowledge of container technologies such as Docker, Kubernetes, Helm, OpenShift/OKD, OpenStack
  • Familiarity with identity and access management (e.g., Keycloak, OAuth/OIDC)
  • Strong oral and written communication skills
  • Initiative and capacity for teamwork and creativity
  • Ability to effectively communicate and collaborate with team members, supervisors, and researchers
  • Ability to manage complex technical details and switch between projects
  • Ability to work independently with minimal supervision, take ownership of issues through resolution, and keep the team informed
  • Comfortable collaborating in a distributed team through weekly Zoom meetings and daily Slack communication
  • Knowledge or experience with Spark, Dask or Ray
  • Knowledge of GitOps and cluster lifecycle tooling such as Flux, Argo CD, or Kubespray
  • Experience with GPU servers, including NVIDIA drivers, CUDA, and GPU scheduling in Kubernetes or HTCondor
  • Familiarity with AI/ML infrastructure, such as model serving, LLM-based tooling, or MCP, is a plus

Benefits

  • Health insurance
  • Retirement plan
  • Paid time off

Company overview

The University of Chicago is a world-renowned private research university founded in 1890 and located in Chicago's Hyde Park neighborhood. As a premier academic institution, it operates one of the most comprehensive biomedical research enterprises in the United States through its Biological Sciences Division, which includes over 1,100 faculty members across 10 basic science and 14 clinical departments. The university manages extensive research infrastructure including the University of Chicago Medicine Comprehensive Cancer Center, multiple specialized research institutes, and maintains affiliations with Argonne National Laboratory and Fermi National Accelerator Laboratory. With research funding exceeding $450 million annually and more than 3,300 patents filed since 1987, the institution is a global leader in scientific discovery and innovation. The Biological Sciences Division alone supports over 500 research-active faculty who secure an average of $588,000 in NIH funding per principal investigator, focusing on areas including cancer biology, immunology, microbiology, molecular metabolism, neuroscience, and evolutionary biology. The university's commitment to interdisciplinary research and its unique position as manager of national laboratories creates unparalleled opportunities for translational research and scientific advancement.

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