Principal AI/ML Engineer – Data Analytics & AI
Eli Lilly and Company
Summary
Lilly USA is scaling AI from prototype to everyday business capability, from how we bring medicines to market to how we help patients access and afford them. The Lilly USA Technology at Lilly Data Analytics & AI team is seeking a Principal AI/ML Engineer to build the agentic AI and machine learning platforms that power this work. You will turn prototypes into reliable, scalable, well-governed production systems and build the data pipelines, partner integrations, and ML engineering foundations that teams reuse across business use cases.
Job description
What You'll Be Doing
As a Principal AI/ML Engineer, you will design and build the engineering backbone for the AI and ML systems that serve business teams across Lilly USA: the orchestration frameworks, end-to-end data and model pipelines, serving infrastructure, and the evaluation and monitoring that keep them reliable in production. You will work at the intersection of enterprise data, business operations, field and customer-facing teams, and third-party partner integrations. You will partner closely with data scientists to productionize models and agentic workflows, and work with technical product managers, business and field teams, and Technology at Lilly colleagues to bring those solutions into real applications in a secure and auditable way.
Examples of the kinds of problems you might work on
- Agentic AI workflows that help field and commercial teams prepare for engagements, surface insights, and act faster, including multi-agent systems that reason over complex data and recommend the best next step.
- Predictive and machine-learning models that inform decisions about market access, customer outreach, resource allocation, and revenue protection, from anomaly detection to next-best-action.
- LLM-powered solutions that make large volumes of unstructured information usable, using techniques like retrieval-augmented generation (RAG) to ground answers in trusted, cited sources.
- Secure, analytics-ready data pipelines that bring partner and vendor data into our platforms at scale, with the data quality, governance, and auditability a regulated environment demands.
- Shared, reusable AI tooling for deployment, evaluation, and monitoring that multiple teams build on instead of rebuilding.
How You'll Succeed
- Build and operationalize agentic AI platforms, including agent-to-agent orchestration frameworks, multi-agent workflow engines, tool and API integration layers, and secure connectivity between agents, enterprise systems, and external partner platforms.
- Build and integrate data pipelines, bringing data from enterprise systems, external vendors, and third-party partners into secure, analytics-ready platforms.
- Deliver AI capabilities for business use cases, such as reporting, predictive analytics, process and decision optimization, and decision support for field and commercial teams.
- Engineer robust, end-to-end AI/ML pipelines, covering data capture, feature engineering, training, fine-tuning, inference, and feedback, at production scale and reliability.
- Stand up ML engineering foundations, including model and prompt versioning, registries, experiment tracking, continuous integration and delivery for models, and automated evaluation and rollback within each pipeline.
- Apply production-grade deployment techniques, including scalable model serving, containerization, inference optimization, and deployment of small and specialized models hosted in-house, with attention to latency, cost, scalability, and data residency.
- Build observability and monitoring for AI systems, including tracing of agentic workflows, cost and latency tracking, drift detection, and integration of AI evaluation into production monitoring.
- Implement governance and data-protection controls, including privacy and regulatory compliance (e.g., HIPAA where applicable), PHI and PII handling, de-identification, and auditability consistent with a regulated environment.
- Design reusable, horizontal engineering capabilities and shared infrastructure that multiple teams and use cases can build on, rather than one-off deployments.
- Partner with data scientists to productionize prototypes and harden them for scale, reliability, and maintainability, and work with business users to drive adoption.
- Communicate clearly with technical and non-technical stakeholders and stay current with emerging agentic and ML engineering tooling.
- Manage and prioritize multiple projects simultaneously.
What You Should Bring
Foundational knowledge in communication, leadership, teamwork, problem solving, solution and blueprint definition, business acumen, architectural processes (e.g., blueprinting, reference architecture, governance), technical standards, project delivery, and the industry. Business Analysis and Technical Leadership, including engaging with the business and proactively seeking opportunities to deliver business value; understanding business requirements and translating business needs and processes into technical terms and vice versa; eliciting and defining requirements; ensuring appropriate business roles are engaged in solution execution; participating in design reviews to ensure traceability of requirements; networking with Technology at Lilly colleagues to determine solutions; seeking opportunities to reuse existing processes and services; and staying abreast of tools and technologies to influence Technology at Lilly strategy.
Requirements
- Master's degree in Computer Science, Computer Engineering, Data Science, or a related quantitative or technical field with at least 1 year of professional experience implementing technical systems, OR Bachelor's degree in the same fields with at least 3 years of professional experience implementing technical systems
- Must be authorized to work in the United States on a full-time basis
- Lilly will not provide support for or sponsor work authorization or visas for this role
- Strong proficiency in Python and sound software-engineering practices, including version control, testing, and code review
- Experience taking ML or data solutions from idea through production deployment, including working with business users to get them adopted
- End-to-end ML engineering: model and prompt versioning, registries, experiment tracking, CI/CD for models, automated evaluation in pipelines, and observability for AI systems
- Production deployment: scalable model serving, containerization, inference optimization, deployment and serving of large models and small specialized models, plus fine-tuning and distillation pipelines
- Agentic platforms: engineering agent-to-agent orchestration and multi-agent workflow frameworks with modern tooling (e.g., LangGraph, LangChain, or equivalent), including tool and API integration and secure agent connectivity
- Data engineering: building scalable data pipelines, SQL and NoSQL data stores, distributed processing, vector databases, and retrieval systems
- Cloud and tooling: experience with AWS or Azure, Databricks, containers, Git, and CI/CD automation
- Governance: experience with secure, auditable systems, PHI and PII handling, and data-residency constraints
- Partner integrations: integrating data and services from external partners through APIs and secure data exchange
- Domain: familiarity with the U.S. healthcare and pharma landscape (e.g., payers, providers, PBMs, patient access), or demonstrated ability to ramp quickly in a complex, regulated domain
- Demonstrated ability to deliver reliable systems in complex data domains and to communicate with a geographically dispersed group of business and technical colleagues
Benefits
- 401(k) Matching
- Pension
- Vacation Benefits
- Medical, Dental & Vision
- Prescription Drug Benefits
- Flexible Spending Accounts
- Life Insurance
- Death Benefits
- Employee Assistance Program
- Fitness Benefits
- Employee Clubs & Activities
- Company Bonus
Company overview
Eli Lilly and Company, commonly known as Lilly, is a leading American multinational pharmaceutical corporation headquartered in Indianapolis, Indiana. Founded in 1876 by Colonel Eli Lilly, the company has grown into one of the world's most valuable pharmaceutical enterprises, with operations in approximately 125 countries. Lilly specializes in developing and manufacturing innovative medicines across multiple therapeutic areas, including diabetes, oncology, neuroscience, immunology, and cardiometabolic diseases. The company is renowned for its groundbreaking work in insulin production, having been the first to mass-produce insulin and later developing the first commercially available insulin product in the U.S. Lilly's current portfolio includes blockbuster medications such as Mounjaro and Zepbound (tirzepatide) for diabetes and obesity, Trulicity (dulaglutide) for type 2 diabetes, Verzenio (abemaciclib) for breast cancer, and Taltz (ixekizumab) for autoimmune conditions. With approximately 47,000 employees worldwide, Lilly maintains a strong commitment to research and development, investing heavily in scientific innovation to address some of the world's most significant health challenges. The company operates with a mission to make life better for people around the world through the discovery and delivery of innovative medicines.