Senior Associate Scientist, Computational Biology
Alector
Summary
Alector is seeking a Senior Associate Scientist, Computational Biology, to join our dynamic team. You will play a key role in advancing our understanding of the biology underlying neurodegenerative diseases, improving our computational pipelines, and supporting the discovery of new therapeutic targets. In this role, you will analyze and interpret complex biological data, with a particular focus on high-content imaging and cell segmentation, alongside high-dimensional multi-omics datasets. You will collaborate with scientists across R&D to design experiments, analyze results, and translate data into meaningful biological insights, while also helping to modernize our pipelines with emerging AI and machine-learning tools.
Job description
Key Goals & Accountabilities
- Advance image-based research! Develop, benchmark, and apply computational methods for high-content imaging, including image segmentation, feature extraction, and quantitative single-cell tracking analysis from a broad variety of samples. Evaluate and integrate deep-learning segmentation approaches to improve accuracy and throughput of our models.
- Modernize our pipelines with AI! Identify, evaluate, and incorporate new AI and machine-learning tools into imaging and multi-omics workflows, improving automation, reproducibility, and the speed of turning raw data into insight.
- Turn complex data into biological insights! Analyze imaging and multi-omics datasets and partner with scientists across R&D to address key biological questions and inform experimental design.
- Make scientific data accessible! Manage and organize data from internal and published studies and develop interactive data-exploration portals for internal use.
- Build efficient and reproducible workflows! Apply best practices in code and data management, including workflow orchestration, version control, and documentation, while identifying opportunities for continuous improvement.
- Communicate findings clearly! Present analytical results in verbal, visual, and written formats to cross-functional audiences with varying levels of technical expertise.
Required Qualifications
- M.S. with at least three years of relevant experience or Ph.D. with at least one year of relevant experience in biotechnology, computational biology, data science, bioinformatics, or a related field.
- Hands-on experience analyzing high-content imaging data, including cell segmentation, feature extraction, and qualification, as well as high-dimensional biological datasets, such as bulk or single-cell RNA sequencing or proteomics.
- Experience applying deep-learning and AI-based methods to image analysis, particularly cell segmentation (e.g., Cellpose, MEDIAR).
- Proficiency in R and Python, including experience with relevant tools and packages such as DESeq2, Seurat, Scanpy, dplyr, and tidyverse for statistical modeling and data analysis.
- Familiarity with shell scripting, version control using Git, and cloud-computing environments such as AWS.
- A fundamental understanding of biology and the ability to apply computational approaches to biological questions.
- Excellent written and verbal communication skills, with the ability to explain complex analyses to both technical and nontechnical audiences.
Preferred Qualifications
- Experience with deep-learning frameworks such as TensorFlow or PyTorch and interest in evaluating emerging AI tools for biological data analysis.
- Experience building or optimizing image-analysis pipelines for high-content or microscopy data.
- Experience mining and analyzing publicly available biological datasets.
- Experience developing dashboards or interactive visualization tools using Shiny, Dash, or similar platforms.
- A fundamental understanding of neuroscience or neurodegenerative disease biology.
Requirements
- M.S. with at least three years of relevant experience or Ph.D. with at least one year of relevant experience in biotechnology, computational biology, data science, bioinformatics, or a related field.
- Hands-on experience analyzing high-content imaging data, including cell segmentation, feature extraction, and qualification, as well as high-dimensional biological datasets, such as bulk or single-cell RNA sequencing or proteomics.
- Experience applying deep-learning and AI-based methods to image analysis, particularly cell segmentation (e.g., Cellpose, MEDIAR).
- Proficiency in R and Python, including experience with relevant tools and packages such as DESeq2, Seurat, Scanpy, dplyr, and tidyverse for statistical modeling and data analysis.
- Familiarity with shell scripting, version control using Git, and cloud-computing environments such as AWS.
- A fundamental understanding of biology and the ability to apply computational approaches to biological questions.
- Excellent written and verbal communication skills, with the ability to explain complex analyses to both technical and nontechnical audiences.
Benefits
- Flexible hybrid work options
- Competitive compensation
- Comprehensive health and well-being benefits
Company overview
Alector is a clinical-stage biotechnology company focused on developing innovative immunotherapies for neurodegenerative diseases and cancer. Founded in 2013 and headquartered in South San Francisco, California, the company leverages advanced antibody technology and insights from neuroimmunology to create potential first- and best-in-class medicines. Alector's pipeline includes therapeutic candidates targeting Alzheimer's disease, frontotemporal dementia, and other neurodegenerative conditions through its proprietary Alector Brain Carrier (ABC) technology designed to transport therapies across the blood-brain barrier. The company combines expertise in human genetics, neuroscience, and immunology to develop treatments that aim to remove toxic proteins, replace deficient proteins, and restore immune and nerve cell function. With approximately 240 employees, Alector operates as a publicly traded company (NASDAQ: ALEC) and has established collaborations with major pharmaceutical partners while maintaining a strong focus on creating transformative therapies for devastating brain disorders.